Agrogenomics Research Center

Rice Applied Genomics Research Unit


2012-2015   2010-2011

  1. Matsubara K, Ebana K, Mizubayashi T, Itoh S, Ando T, Nonoue Y, Ono N, Shibaya T, Ogiso E, Hori K, Fukuoka S, Yano M (2011) Relationship between transmission ratio distortion and genetic divergence in intraspecific rice crosses Molecular Genetics and Genomics 286(5-6):307-319 doi:10.1007/s00438-011-0648-6
  2. Matsubara K, Yamanouchi U, Nonoue Y, Sugimoto K, Wang ZX, Minobe Y, Yano M (2011) Ehd3, encoding a PHD finger-containing protein, is a critical promoter of rice flowering The Plant Journal 66:603-612 doi: 10.1111/j.1365-313X.2011.04517.x
  3. Shibaya T, Nonoue Y, Ono N, Yamanouchi U, Hori K, Yano M (2011) Genetic interactions involved in the inhibition of heading by heading date QTL, Hd2 in rice under long-day conditions Theoretical and Applied Genetics 123(7):1133-1143 doi:10.1007/s00122-011-1654-0
  4. Taguchi-Shiobara F, Kawagoe Y, Kato H, Onodera H, Tagiri A, Hara N, Miyao A, Hirochika H, Kitano H, Yano M, Toki S (2011) A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets Breeding Science 61(1):17-25 doi:10.1270/jsbbs.61.17
  5. Taguchi-Shiobara F, Kojima Y, Ebitani T, Yano M, Ebana K (2011) Variation in domesticated rice inflorescence architecture revealed by principal component analysis and quantitative trait locus analysis Breeding Science 61(1):52-60 doi:10.1270/jsbbs.61.52
  6. Uga Y, Okuno K ,Yano M (2011) Dro1, a major QTL involved in deep rooting of rice under upland field conditions Journal of Experimental Botany published online: January 6, 2011 doi:10.1093/jxb/erq429
  7. Ebana K, Yonemaru J, Fukuoka S, Iwata H, Kanamori H, Namiki N, Nagasaki H, Yano M (2010) Genetic structure revealed by a whole-genome single-nucleotide polymorphism survey of diverse accessions of cultivated Asian rice (Oryza sativa L.) Breeding Science 60(4):390-397 doi:10.1270/jsbbs.60.390
  8. Fukuoka S, Ebana K, Yamamoto T, Yano M (2010) Integration of genomics into rice breeding Rice 3:131-137 doi:10.1007/s12284-010-9044-9
  9. Fukuoka S, Nonoue Y, Yano M (2010) Germplasm enhancement by developing advanced plant materials from diverse rice accessions Breeding Science 60:509-517 doi:10.1270/jsbbs.60.509
  10. Hori K, Sugimoto K, Nonoue Y, Ono N, Matsubara K, Yamanouchi U, Abe A, Takeuchi Y, Yano M (2010) Detection of quantitative trait loci controlling pre-harvest sprouting resistance by using backcrossed populations of japonica rice cultivars Theoretical and Applied Genetics 120(8):1547-1557 doi:10.1007/s00122-010-1275-z
  11. Nagasaki H, Ebana K, Shibaya T, Yonemaru J, Yano M (2010) Core single-nucleotide polymorphisms - a tool for genetic analysis of the Japanese rice population Breeding Science Vol. 60: 648-655 doi:10.1270/jsbbs.60.648
  12. Ogiso E, Takahashi Y, Sasaki T, Yano M, Izawa T (2010) The role of CK2 in flowering time regulation has diversified during evolution Plant Physiology 152:808-820 doi:10.1104/pp.109.148908
  13. Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T, Yano M (2010) Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice Proceedings of the National Academy of Sciences USA 107:5792-5797 doi:10.1073/pnas.0911965107
  14. Takai T, Kondo M, Yano M, Yamamoto T (2010) A quantitative trait locus for chlorophyll content and its association with leaf photosynthesis in rice Rice 172-180 doi:10.1007/s12284-010-9047-6
  15. Takai T, Yano M, Yamamoto T (2010) Canopy temperature on clear and cloudy days can be used to estimate varietal differences in stomatal conductance in rice Field Crops Research 115:165-170 doi:10.1016/j.fcr.2009.10.019
  16. Uga Y, Okuno K, Yano M (2010) Fine mapping of Sta1, a quantitative trait locus determining stele transversal area, on rice chromosome 9 Molecular Breeding 26:533-538 doi:10.1007/s11032-010-9450-0
  17. Yamamoto T, Nagasaki H, Yonemaru J, Ebana K, Nakajima M, Shibaya T, Yano M (2010) Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms BMC Genomics 11:267 doi:10.1186/1471-2164-11-267
  18. Yano M, Ebana K, Yamamoto T (2010) Genomics-assisted breeding in rice Gamma Field Symposia 47: 1-9
  19. Yonemaru J, Yamamoto T, Fukuoka S, Uga Y, Hori K, Yano M (2010) Q-TARO: QTL Annotation Rice Online Database Rice 3:194-203 doi:10.1007/s12284-010-9041-z