Nishizawa-Yokoi A, Endo M, Ohtsuki N, Saika H, Toki S (2014) Precision genome editing in plants via gene targeting and piggyBac-mediated marker excision The Plant Journal (Published Online):Early View（DOI: 10.1111/tpj.12693 ）
Nishizawa-Yokoi A, Endo M, Osakabe K, Saika H, Toki S (2014) Precise marker excision system using an animal-derived piggyBac transposon in plants The Plant Journal 77(3):454-463
Endo M, Shimizu T, Fujimori T, Yanagisawa S, Toki S (2013) Herbicide-resistant mutations in acetolactate synthase can reduce feedback inhibition and lead to accumulation of branched-chain amino acids Food and Nutrition Sciences 4(5):522-528
Kanno T, Yoshikawa M, Habu Y (2013) Locus-specific requirements of DDR complexes for gene-body methylation of TAS genes in Arabidopsis thalianaPlant Molecular Biology Reporter (Online First)
Kishimoto N, Nagai J, Kinoshita T, Ueno K, Ohashi Y, Mitsuhara I (2013) DNA elements reducing transcriptional gene silencing revealed by a novel screening strategy PLoS ONE 8(1):e54670
Kwon Y-I, Abe K, Endo M, Osakabe K, Ohtsuki N, Nishizawa-Yokoi A, Tagiri A, Saika H, Toki S (2013) DNA replication arrest leads to enhanced homologous recombination and cell death in meristems of rice OsRecQl4 mutants BMC Plant Biology 13:62
Sawaki N, Tsujimoto R, Shigyo M, Konishi M, Toki S, Fujiwara T, Yanagisawa S (2013) A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice Plant and Cell Physiology 54(4):506-517
Takano N, Takahashi Y, Yamamoto M, Teranishi M, Yamaguchi H, Sakamoto A.N, Hase Y, Fujisawa H, Wu J, Matsumoto T, Toki S, Hidema J (2013) Isolation of a novel UVB-tolerant rice mutant obtained by exposure to carbon-ion beams Journal of Radiation Research (Advance Access)
Toda Y, Tanaka M, Ogawa D, Kurata K, Kurotani K, Habu Y, Ando T, Sugimoto K, Mitsuda N, Katoh E, Abe K, Miyao A, Hirochika H, Hattori T, Takeda S (2013) RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation The Plant Cell 25(5):1709-1725
Yoshikawa M, Iki T, Tsutsui Y, Miyashita K, Poethig R.S, Habu Y, Ishikawa M (2013) 3’ fragment of miR173-programmed RISC-cleaved RNA is protected from degradation in a complex with RISC and SGS3 Proceedings of the National Academy of Sciences of the United States of America 110(10):4117-4122
Endo M, Nakayama S, Umeda-Hara C, Ohtsuki N, Saika H, Umeda M, Toki S (2012) CDKB2 is involved in mitosis and DNA damage response in rice The Plant Journal 69(6):967-977
Higo H, Tahir M, Takashima K, Miura A, Watanabe K, Tagiri A, Ugaki M, Ishikawa R, Eiguchi M, Kurata N, Sasaki T, Richards E, Takano M, Kishimoto N, Kakutani T, Habu Y (2012) DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa) Molecular Genetics and Genomics 287(10):785-792
Kwon Y-I, Abe K, Osakabe K, Endo M, Nishizawa-Yokoi A, Saika H, Shimada H, Toki S (2012) Overexpression of OsRecQl4 and/or OsExo1 enhances DSB-induced homologous recombination in rice Plant and Cell Physiology 53(12):2142-2152
Morita Y, Saito R, Ban Y, Tanikawa N, Kuchitsu K, Ando T, Yoshikawa M, Habu Y, Ozeki Y, Nakayama M (2012) Tandemly arranged chalcone synthase A genes contribute to the spatially regulated expression of siRNA and the natural bicolor floral phenotype in Petunia hybridaThe Plant Journal 70(5):739-749
Nishizawa-Yokoi A, Nonaka S, Saika H, Kwon Y-I, Osakabe K, Toki S (2012) Suppression of Ku70/80 or Lig4 leads to decreased stable transformation and enhanced homologous recombination in rice New Phytologist 196(4):1048-1059
Saze H, Tsugane K, Kanno T, Nishimura T (2012) DNA Methylation in plants: Relationship to small RNAs and histone modifications, and functions in transposon inactivation Plant and Cell Physiology 53(5):766-784
Saika H, Nonaka S, Osakabe K, Toki S (2012) Sequential monitoring of transgene expression following Agrobacterium-mediated transformation of rice Plant and Cell Physiology 53(11):1974-1983
Saika H, Oikawa A, Nakabayashi R, Matsuda F, Saito K, Toki S (2012) Changes in primary and secondary metabolite levels in response to gene targeting-mediated site-directed mutagenesis of the anthranilate synthase gene in rice Metabolites 2(4):1123-1138
Fukuda A, Nakamura A, Hara N, Toki S, Tanaka Y (2011) Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes Planta 233(1):175-188
Saika H, Oikawa A, Matsuda F, Onodera H, Saito K, Toki S (2011) Application of gene targeting to designed mutation breeding of high-tryptophan rice Plant Physiology 156(3):1269-1277
Saika H, Sakamoto W, Maekawa M, Toki S (2011) Highly efficient visual selection of transgenic rice plants using green fluorescent protein or anthocyanin synthetic genes Plant Biotechnology 28(1):107-110
Habu Y, Yoshikawa M (2010) Locus-specific dependency of endogenous silent loci on MOM1 and non-CG methylation in Arabidopsis thalianaPlant Signaling & Behavior 5(6):724-726
Osakabe K, Osakabe Y, Toki S (2010) Site-directed mutagenesis in Arabidopsis using custom-designed zinc finger nucleases Proceedings of the National Academy of Sciences of the United States of America 107(26):12034-12039
Saika H, Toki S (2010) Mature seed-derived callus of the model indica rice variety Kasalath is highly competent in Agrobacterium-mediated transformation Plant Cell Reports 29(12):1351-1364
She K-C, Kusano H, Koizumi K, Yamakawa H, Hakata M, Imamura T, Fukuda M, Naito N, Tsurumaki Y, Yaeshima M, Tsuge T, Matsumoto K, Kudoh M, Itoh E, Kikuchi S, Kishimoto N, Yazaki J, Ando T, Yano M, Aoyama T, Sasaki T, Satoh H, Shimada H (2010) A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality The Plant Cell 22(10):3280-3294
Takahara K, Kasajima I, Takahashi H, Hashida S, Itami T, Onodera H, Toki S, Yanagisawa S, Kawai-Yamada M, Uchimiya H (2010) Metabolome and photochemical analysis of rice plants over-expressing Arabidopsis NAD kinase gene Plant Physiology 152(4):1863-1873
Numa H, Kim J-M, Matsui A, Kurihara Y, Morosawa T, Ishida J, Mochizuki Y, Kimura H, Shinozaki K, Toyoda T, Seki M, Yoshikawa M, Habu Y (2009) Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thalianaThe EMBO Journal 29(2):352-362
